Elena Yarmola

Elena Yarmola,

Research Associate Professor

Department: DN-ORAL BIOLOGY
Business Phone: (352) 273-8842
Business Email: yarmola@ufl.edu

Publications

2020
Characterization of Post-Traumatic Osteoarthritis in Rats Following Anterior Cruciate Ligament Rupture by Non-Invasive Knee Injury (NIKI).
Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 38(2):356-367 [DOI] 10.1002/jor.24470. [PMID] 31520482.
2020
Enhanced purification coupled with biophysical analyses shows cross-β structure as a core building block for Streptococcus mutans functional amyloids.
Scientific reports. 10(1) [DOI] 10.1038/s41598-020-62115-7. [PMID] 32198417.
2020
The effects of age on the severity of joint damage and intra-articular inflammation following a simulated medial meniscus injury in 3, 6, and 9 month old male rats.
Connective tissue research. 61(1):82-94 [DOI] 10.1080/03008207.2019.1641495. [PMID] 31438735.
2020
Use of magnetic capture to identify elevated levels of CCL2 following intra-articular injection of monoiodoacetate in rats.
Connective tissue research. 61(5):485-497 [DOI] 10.1080/03008207.2019.1620223. [PMID] 31438731.
2017
Comparing intra-articular CTXII levels assessed via magnetic capture or lavage in a rat knee osteoarthritis model.
Osteoarthritis and cartilage. 25(7):1189-1194 [DOI] 10.1016/j.joca.2017.01.009. [PMID] 28137664.
2017
Magnetic particle translation as a surrogate measure for synovial fluid mechanics.
Journal of biomechanics. 60:9-14 [DOI] 10.1016/j.jbiomech.2017.05.015. [PMID] 28583675.
2016
Investigation of the Capture of Magnetic Particles From High-Viscosity Fluids Using Permanent Magnets.
IEEE transactions on bio-medical engineering. 63(2):372-8 [DOI] 10.1109/TBME.2015.2458783. [PMID] 26208261.
2016
Magnetic Capture of a Molecular Biomarker from Synovial Fluid in a Rat Model of Knee Osteoarthritis.
Annals of biomedical engineering. 44(4):1159-69 [DOI] 10.1007/s10439-015-1371-y. [PMID] 26136062.
2013
Magnetic Collection of Joint-Level Osteoarthritis Biomarkers
. 21:S84-S85
2010
Identification of a cofilin-like actin-binding site on translationally controlled tumor protein (TCTP).
FEBS letters. 584(23):4756-60 [DOI] 10.1016/j.febslet.2010.10.054. [PMID] 21036172.
2009
Exogenous thymosin beta4 prevents apoptosis in human intervertebral annulus cells in vitro.
Biotechnic & histochemistry : official publication of the Biological Stain Commission. 84(6):287-94 [DOI] 10.3109/10520290903116884. [PMID] 20055734.
2009
How depolymerization can promote polymerization: the case of actin and profilin.
BioEssays : news and reviews in molecular, cellular and developmental biology. 31(11):1150-60 [DOI] 10.1002/bies.200900049. [PMID] 19795407.
2008
Effect of profilin on actin critical concentration: a theoretical analysis.
Biophysical journal. 95(12):5544-73 [DOI] 10.1529/biophysj.108.134569. [PMID] 18835900.
2007
Thymosin beta4: actin regulation and more.
Annals of the New York Academy of Sciences. 1112:76-85 [PMID] 17947588.
View on: PubMed
2006
A CapG gain-of-function mutant reveals critical structural and functional determinants for actin filament severing.
The EMBO journal. 25(19):4458-67 [PMID] 16977317.
View on: PubMed
2006
Profilin: emerging concepts and lingering misconceptions.
Trends in biochemical sciences. 31(4):197-205 [PMID] 16542844.
View on: PubMed
2006
Tropomodulin 3 binds to actin monomers.
The Journal of biological chemistry. 281(47):36454-65 [PMID] 17012745.
View on: PubMed
2005
MARCKS is a natively unfolded protein with an inaccessible actin-binding site: evidence for long-range intramolecular interactions.
The Journal of biological chemistry. 280(11):9946-56 [PMID] 15640140.
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2004
Actin crystal dynamics: structural implications for F-actin nucleation, polymerization, and branching mediated by the anti-parallel dimer.
Journal of structural biology. 146(3):291-301 [PMID] 15099571.
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2004
Effects of profilin and thymosin beta4 on the critical concentration of actin demonstrated in vitro and in cell extracts with a novel direct assay.
The Journal of biological chemistry. 279(32):33519-27 [PMID] 15184365.
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2004
Vacuolar H+-ATPase binding to microfilaments: regulation in response to phosphatidylinositol 3-kinase activity and detailed characterization of the actin-binding site in subunit B.
The Journal of biological chemistry. 279(9):7988-98 [PMID] 14662773.
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2003
Depolymerization of actin filaments by profilin. Effects of profilin on capping protein function.
The Journal of biological chemistry. 278(27):24629-35 [PMID] 12730212.
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2002
Control of actin dynamics by proteins made of beta-thymosin repeats: the actobindin family.
The Journal of biological chemistry. 277(17):14786-92 [PMID] 11856744.
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2002
Polylysine induces an antiparallel actin dimer that nucleates filament assembly: crystal structure at 3.5-A resolution.
The Journal of biological chemistry. 277(23):20999-1006 [PMID] 11932258.
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2001
Actin filament cross-linking by MARCKS: characterization of two actin-binding sites within the phosphorylation site domain.
The Journal of biological chemistry. 276(25):22351-8 [PMID] 11294839.
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2001
Formation and implications of a ternary complex of profilin, thymosin beta 4, and actin.
The Journal of biological chemistry. 276(49):45555-63 [PMID] 11579089.
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2000
Actin-latrunculin A structure and function. Differential modulation of actin-binding protein function by latrunculin A.
The Journal of biological chemistry. 275(36):28120-7 [PMID] 10859320.
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1999
Mass spectrometric analysis of the electroeluates of fluorescent proteins after preparative electrophoresis in the automated HPGE-1000 apparatus.
Electrophoresis. 20(3):445-51 [PMID] 10217150.
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1998
Enhanced detection sensitivity of “fluorescence reduction” by shifting the analyte absorbance spectrum and use of a fluorescent paper with higher signal/noise ratio.
Electrophoresis. 19(2):206-11 [PMID] 9548280.
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1997
Improved sensitivity of detection with the commercial automated gel electrophoresis (HPGE-1000) apparatus through modification of its optical system.
Electrophoresis. 18(11):1951-4 [PMID] 9420151.
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1996
The relative contributions of dispersion and diffusion to band spreading (resolution) in gel electrophoresis.
Electrophoresis. 17(9):1416-9 [PMID] 8905256.
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1995
A comparison of resolution of DNA fragments between agarose gel and capillary zone electrophoresis in agarose solutions.
Electrophoresis. 16(8):1345-53 [PMID] 8529595.
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1995
Band width measurement in automated gel electrophoresis apparatus: DNA dispersion in a discontinuous system and in a single buffer.
Electrophoresis. 16(3):345-9 [PMID] 7607167.
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1995
Commercial automated gel electrophoresis apparatus: application to DNA, band dispersion, nonlinear Ferguson curves, and isolation.
Electrophoresis. 16(5):713-8 [PMID] 7588549.
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1995
Nonlinear “Ferguson curves” by two runs of the commercial automated HPGE-1000 gel electrophoresis apparatus with intermittent scanning of fluorescence.
Electrophoresis. 16(3):350-3 [PMID] 7607168.
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1994
Low-temperature magnetic circular dichroism investigation of the active site of chloroperoxidase.
FEBS letters. 355(3):279-81 [PMID] 7988689.
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1989
Contribution of protein conformation to heme stereochemistry and reactivity. Low-temperature magnetic circular dichroism data.
Journal of biomolecular structure & dynamics. 7(1):207-24 [PMID] 2818870.
View on: PubMed
1988
Heme-linked ionization and ligand binding produce identical changes of proximal heme stereochemistry in reduced horseradish peroxidase. Evidence for existence of two protein conformations.
FEBS letters. 235(1-2):63-6 [PMID] 3402602.
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1985
Osmotic pressure of DNA solutions and effective diameter of the double helix.
Journal of biomolecular structure & dynamics. 2(5):981-93 [PMID] 3916939.
View on: PubMed

Patents

Published August 2016
Magnetic Removal of Inflammatory Mediators Using Functionalized Nanoparticles Do
#US-2016-0345941-A1
Published September 2012
Magnetic Removal of Inflammatory Mediators Using Functionalized Nanoparticles Do
#US2014/0052020 A1

Contact Details

Phones:
Business:
(352) 273-8842
Emails:
Business:
yarmola@ufl.edu